SQANTI3 Analysis: novel_not_in_catalog Isoforms

ReferenceNew SiteIsoform (NNC)

Category Definition: NNC (Novel Not in Catalog): The query isoform does not have a FSM or ISM match, and has at least one donor or acceptor site that is not annotated.

For more details on categories, visit here: SQANTI3 Wiki: Categories.
For a detailed explanation of each column of the table (SQANTI3 classification), see here: Column Glossary.


How to Filter:


Generate Trix String (for UCSC Genome Browser search):

Generate Filter String (for Table Browser):

Total transcripts: 9073 | Close Window

isoformchromstrandlengthexonsstructural_categoryassociated_geneassociated_transcriptref_lengthref_exonsdiff_to_TSSdiff_to_TTSdiff_to_gene_TSSdiff_to_gene_TTSsubcategoryRTS_stageall_canonicalmin_sample_covmin_covmin_cov_possd_covFLn_indelsn_indels_juncbiteiso_expgene_expratio_expFSM_classcodingORF_lengthCDS_lengthCDS_startCDS_endCDS_genomic_startCDS_genomic_endpredicted_NMDperc_A_downstream_TTSseq_A_downstream_TTSdist_to_CAGE_peakwithin_CAGE_peakdist_to_polyA_sitewithin_polyA_sitepolyA_motifpolyA_distpolyA_motif_foundratio_TSS
isoformchromstrandlengthexonsstructural_categoryassociated_geneassociated_transcriptref_lengthref_exonsdiff_to_TSSdiff_to_TTSdiff_to_gene_TSSdiff_to_gene_TTSsubcategoryRTS_stageall_canonicalmin_sample_covmin_covmin_cov_possd_covFLn_indelsn_indels_juncbiteiso_expgene_expratio_expFSM_classcodingORF_lengthCDS_lengthCDS_startCDS_endCDS_genomic_startCDS_genomic_endpredicted_NMDperc_A_downstream_TTSseq_A_downstream_TTSdist_to_CAGE_peakwithin_CAGE_peakdist_to_polyA_sitewithin_polyA_sitepolyA_motifpolyA_distpolyA_motif_foundratio_TSS