Category Definition: NNC (Novel Not in Catalog): The query isoform does not have a FSM or ISM match, and has at least one donor or acceptor site that is not annotated.
For more details on categories, visit here: SQANTI3 Wiki: Categories.
For a detailed explanation of each column of the table (SQANTI3 classification), see here: Column Glossary.
How to Filter:
100:1000 (values between 100 and 1000), 100: (>100), or :1000 (<1000). Single numbers perform an exact match.Generate Trix String (for UCSC Genome Browser search):
100:1000) are not supported by Trix and will be ignored, only exact numeric matches are supported.structural_category_full_splice_match, strand_plus, coding_coding).Generate Filter String (for Table Browser):
name field to create a custom track with only those isoforms.Total transcripts: 9073 | Close Window
| isoform | chrom | strand | length | exons | structural_category | associated_gene | associated_transcript | ref_length | ref_exons | diff_to_TSS | diff_to_TTS | diff_to_gene_TSS | diff_to_gene_TTS | subcategory | RTS_stage | all_canonical | min_sample_cov | min_cov | min_cov_pos | sd_cov | FL | n_indels | n_indels_junc | bite | iso_exp | gene_exp | ratio_exp | FSM_class | coding | ORF_length | CDS_length | CDS_start | CDS_end | CDS_genomic_start | CDS_genomic_end | predicted_NMD | perc_A_downstream_TTS | seq_A_downstream_TTS | dist_to_CAGE_peak | within_CAGE_peak | dist_to_polyA_site | within_polyA_site | polyA_motif | polyA_dist | polyA_motif_found | ratio_TSS |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| isoform | chrom | strand | length | exons | structural_category | associated_gene | associated_transcript | ref_length | ref_exons | diff_to_TSS | diff_to_TTS | diff_to_gene_TSS | diff_to_gene_TTS | subcategory | RTS_stage | all_canonical | min_sample_cov | min_cov | min_cov_pos | sd_cov | FL | n_indels | n_indels_junc | bite | iso_exp | gene_exp | ratio_exp | FSM_class | coding | ORF_length | CDS_length | CDS_start | CDS_end | CDS_genomic_start | CDS_genomic_end | predicted_NMD | perc_A_downstream_TTS | seq_A_downstream_TTS | dist_to_CAGE_peak | within_CAGE_peak | dist_to_polyA_site | within_polyA_site | polyA_motif | polyA_dist | polyA_motif_found | ratio_TSS |